STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI47484.1Putative methanogenesis marker protein 5. (149 aa)    
Predicted Functional Partners:
AGI47483.1
Putative methanogenesis marker protein 6.
      0.947
AGI47479.1
Archaeal conserved hypothetical protein.
  
    0.899
AGI47485.1
Putative methanogenesis marker protein 15.
  
    0.822
AGI47482.1
Putative peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family; Belongs to the UPF0288 family.
       0.818
AGI47486.1
Putative methanogenesis marker protein 17.
       0.818
AGI47487.1
Putative methanogenesis marker protein 7.
       0.818
AGI47488.1
Hypothetical protein.
       0.812
AGI47480.1
Methyl coenzyme M reductase system, component A2.
       0.797
AGI47481.1
Methyl-coenzyme M reductase I operon protein C.
       0.795
AGI47489.1
FAD/FMN-containing dehydrogenase.
       0.571
Your Current Organism:
Thermoplasmatales archaeon BRNA1
NCBI taxonomy Id: 1054217
Other names: T. archaeon BRNA1
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