STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI47501.1Uroporphyrinogen-III decarboxylase. (348 aa)    
Predicted Functional Partners:
AGI48199.1
Uroporphyrinogen-III synthase.
  
 
 0.917
AGI48198.1
uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
    
 0.914
AGI48395.1
Uroporphyrinogen-III decarboxylase.
  
  
 
0.913
AGI47502.1
Isocitrate/isopropylmalate dehydrogenase.
  
 
 0.782
AGI48218.1
Precorrin-6x reductase.
  
  
 0.703
AGI47139.1
Putative cobalamin binding protein.
 
  
 0.702
AGI48078.1
Putative metal-binding protein.
  
   
 0.676
AGI48197.1
Porphobilinogen deaminase.
  
 
 0.559
AGI48328.1
Putative metal-binding protein.
  
     0.556
AGI47503.1
Deoxyhypusine synthase.
       0.552
Your Current Organism:
Thermoplasmatales archaeon BRNA1
NCBI taxonomy Id: 1054217
Other names: T. archaeon BRNA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.