STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI47592.1Putative transcriptional regulator. (230 aa)    
Predicted Functional Partners:
AGI47593.1
Putative hydroxymethylglutaryl-CoA synthase; Belongs to the thiolase-like superfamily. UPF0219 family.
  
    0.950
AGI47594.1
Acetyl-CoA acetyltransferase.
  
    0.909
AGI47595.1
Putative nucleic-acid-binding protein containing a Zn-ribbon.
  
    0.902
carS
CDP-diglyceride synthetase; Catalyzes the formation of CDP-2,3-bis-(O-geranylgeranyl)-sn- glycerol (CDP-archaeol) from 2,3-bis-(O-geranylgeranyl)-sn-glycerol 1- phosphate (DGGGP) and CTP. This reaction is the third ether-bond- formation step in the biosynthesis of archaeal membrane lipids.
  
     0.658
AGI48487.1
Radical SAM domain protein, pyruvate formate-lyase activating enzyme -like protein.
  
     0.621
rpl29
LSU ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family.
  
     0.591
AGI47523.1
Archaeal S-adenosylmethionine synthetase.
 
     0.590
AGI48534.1
Putative metal-dependent hydrolase (urease superfamily).
  
     0.587
AGI47898.1
Putative membrane protein.
 
     0.577
AGI48144.1
Queuine tRNA-ribosyltransferase containing PUA domain.
  
     0.577
Your Current Organism:
Thermoplasmatales archaeon BRNA1
NCBI taxonomy Id: 1054217
Other names: T. archaeon BRNA1
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