STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI47980.1S-adenosylmethionine decarboxylase. (138 aa)    
Predicted Functional Partners:
AGI47981.1
Hypothetical protein.
       0.580
AGI48529.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
     0.574
AGI47250.1
ABC-type Fe3+ transport system, permease component.
  
   
 0.559
AGI48265.1
Hypothetical protein.
 
  
 0.515
AGI48223.1
Putative amidohydrolase.
 
  
 0.469
AGI48276.1
Putative divalent cation transporter.
 
     0.456
AGI47257.1
Agmatinase; Belongs to the arginase family.
     
 0.439
AGI47982.1
Hypothetical protein.
       0.439
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
     
 0.436
Your Current Organism:
Thermoplasmatales archaeon BRNA1
NCBI taxonomy Id: 1054217
Other names: T. archaeon BRNA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.