AGI48037.1 protein (Thermoplasmatales archaeon BRNA1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AGI48037.1

ATPase, P-type (transporting), HAD superfamily, subfamily IC. (871 aa)

Predicted Functional Partners:

AGI48388.1

0.999

AGI48226.1

0.678

AGI47172.1

0.565

AGI48353.1

0.542

AGI47650.1

0.534

AGI47934.1

0.528

AGI47558.1

0.514

AGI48036.1

0.497

AGI48034.1

0.482

pgk

0.473

Your Current Organism:

Thermoplasmatales archaeon BRNA1

NCBI taxonomy Id: 1054217
Other names: T. archaeon BRNA1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGI47172.1	AGI47934.1	TALC_00158	TALC_00940	Conserved hypothetical ATP binding protein.	SPFH domain, Band 7 family protein.	0.536
AGI47172.1	AGI48037.1	TALC_00158	TALC_01045	Conserved hypothetical ATP binding protein.	ATPase, P-type (transporting), HAD superfamily, subfamily IC.	0.565
AGI47172.1	pgk	TALC_00158	TALC_01405	Conserved hypothetical ATP binding protein.	3-phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.	0.657
AGI47558.1	AGI48037.1	TALC_00558	TALC_01045	Kef-type K+ transport systems, membrane components.	ATPase, P-type (transporting), HAD superfamily, subfamily IC.	0.514
AGI47650.1	AGI48037.1	TALC_00653	TALC_01045	Cation diffusion facilitator family transporter.	ATPase, P-type (transporting), HAD superfamily, subfamily IC.	0.534
AGI47650.1	AGI48353.1	TALC_00653	TALC_01374	Cation diffusion facilitator family transporter.	Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase.	0.418
AGI47934.1	AGI47172.1	TALC_00940	TALC_00158	SPFH domain, Band 7 family protein.	Conserved hypothetical ATP binding protein.	0.536
AGI47934.1	AGI48037.1	TALC_00940	TALC_01045	SPFH domain, Band 7 family protein.	ATPase, P-type (transporting), HAD superfamily, subfamily IC.	0.528
AGI48034.1	AGI48036.1	TALC_01042	TALC_01044	ABC-type multidrug transport system, ATPase component.	Hypothetical protein.	0.569
AGI48034.1	AGI48037.1	TALC_01042	TALC_01045	ABC-type multidrug transport system, ATPase component.	ATPase, P-type (transporting), HAD superfamily, subfamily IC.	0.482
AGI48036.1	AGI48034.1	TALC_01044	TALC_01042	Hypothetical protein.	ABC-type multidrug transport system, ATPase component.	0.569
AGI48036.1	AGI48037.1	TALC_01044	TALC_01045	Hypothetical protein.	ATPase, P-type (transporting), HAD superfamily, subfamily IC.	0.497
AGI48037.1	AGI47172.1	TALC_01045	TALC_00158	ATPase, P-type (transporting), HAD superfamily, subfamily IC.	Conserved hypothetical ATP binding protein.	0.565
AGI48037.1	AGI47558.1	TALC_01045	TALC_00558	ATPase, P-type (transporting), HAD superfamily, subfamily IC.	Kef-type K+ transport systems, membrane components.	0.514
AGI48037.1	AGI47650.1	TALC_01045	TALC_00653	ATPase, P-type (transporting), HAD superfamily, subfamily IC.	Cation diffusion facilitator family transporter.	0.534
AGI48037.1	AGI47934.1	TALC_01045	TALC_00940	ATPase, P-type (transporting), HAD superfamily, subfamily IC.	SPFH domain, Band 7 family protein.	0.528
AGI48037.1	AGI48034.1	TALC_01045	TALC_01042	ATPase, P-type (transporting), HAD superfamily, subfamily IC.	ABC-type multidrug transport system, ATPase component.	0.482
AGI48037.1	AGI48036.1	TALC_01045	TALC_01044	ATPase, P-type (transporting), HAD superfamily, subfamily IC.	Hypothetical protein.	0.497
AGI48037.1	AGI48226.1	TALC_01045	TALC_01240	ATPase, P-type (transporting), HAD superfamily, subfamily IC.	Excinuclease ATPase subunit.	0.678
AGI48037.1	AGI48353.1	TALC_01045	TALC_01374	ATPase, P-type (transporting), HAD superfamily, subfamily IC.	Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase.	0.542