STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI48138.1Tfp pilus assembly protein PilF. (1211 aa)    
Predicted Functional Partners:
AGI48057.1
Listeria/Bacterioides repeat protein.
  
     0.611
AGI48027.1
Fe-S oxidoreductase.
  
     0.584
AGI47080.1
Acetolactate synthase, small (regulatory) subunit.
  
     0.572
AGI47973.1
Uncharacterized protein family (UPF0153).
  
     0.525
AGI47879.1
Hypothetical protein.
  
     0.492
AGI47173.1
Hypothetical protein.
  
     0.475
AGI47278.1
Putative transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen.
  
     0.469
AGI47082.1
Glycosyl transferase family 2.
  
     0.467
AGI48112.1
Hypothetical protein.
  
     0.467
AGI48190.1
Listeria/Bacterioides repeat protein.
  
     0.461
Your Current Organism:
Thermoplasmatales archaeon BRNA1
NCBI taxonomy Id: 1054217
Other names: T. archaeon BRNA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.