STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI48190.1Listeria/Bacterioides repeat protein. (2736 aa)    
Predicted Functional Partners:
AGI47516.1
Hypothetical protein.
  
     0.642
AGI47973.1
Uncharacterized protein family (UPF0153).
  
     0.638
AGI47308.1
Transcriptional regulator.
  
     0.590
AGI47730.1
Hypothetical protein.
  
     0.574
AGI47838.1
Listeria-Bacteroides repeat domain (List_Bact_rpt).
  
     0.558
AGI47790.1
Hypothetical protein.
  
     0.545
AGI47789.1
Hypothetical protein.
  
     0.542
AGI47951.1
YqaJ viral recombinase family.
  
     0.517
AGI47998.1
Amino acid transporter.
  
     0.501
AGI48398.1
Amino acid transporter.
  
     0.501
Your Current Organism:
Thermoplasmatales archaeon BRNA1
NCBI taxonomy Id: 1054217
Other names: T. archaeon BRNA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.