STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI48361.1Endonuclease IV. (377 aa)    
Predicted Functional Partners:
AGI48513.1
Endonuclease IV.
  
  
 
0.921
AGI48362.1
Putative sugar phosphate isomerase involved in capsule formation.
       0.793
AGI48409.1
DNA polymerase elongation subunit (family B).
  
 
 
 0.707
AGI48104.1
DNA-(apurinic or apyrimidinic site) lyase/endonuclease III.
  
 
 0.593
rpl18e
LSU ribosomal protein L18AE; Belongs to the eukaryotic ribosomal protein eL18 family.
 
     0.580
rpl13
Ribosomal protein L13, archaeal/eukaryotic; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
    0.556
rps9
SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.
     
 0.539
rpoN
DNA-directed RNA polymerase, subunit N; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoN/eukaryotic RPB10 RNA polymerase subunit family.
       0.516
AGI47673.1
Putative ATP-dependent protease.
 
 
   0.513
rps17e
SSU ribosomal protein S17E; Belongs to the eukaryotic ribosomal protein eS17 family.
  
     0.496
Your Current Organism:
Thermoplasmatales archaeon BRNA1
NCBI taxonomy Id: 1054217
Other names: T. archaeon BRNA1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.