STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI48439.1Cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. (379 aa)    
Predicted Functional Partners:
AGI48440.1
FeS cluster assembly scaffold protein NifU, Clostridium type.
 
 0.999
AGI47195.1
Thiamine biosynthesis ATP pyrophosphatase.
  
 0.970
AGI48420.1
Thiamine biosynthesis ATP pyrophosphatase.
  
 0.970
AGI48364.1
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.
   
 0.960
AGI48133.1
Hypothetical protein.
 
  
 0.822
psmB
20S proteasome, alpha and beta subunits; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.
 
      0.707
AGI47995.1
Selenocysteine lyase.
    
0.702
AGI48437.1
Cysteine synthase.
  
  
 0.697
AGI47514.1
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1.
   
 0.617
AGI47568.1
Thiamine biosynthesis protein ThiF, family 2.
   
 0.617
Your Current Organism:
Thermoplasmatales archaeon BRNA1
NCBI taxonomy Id: 1054217
Other names: T. archaeon BRNA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.