STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI48506.1Lhr-like helicase. (915 aa)    
Predicted Functional Partners:
AGI47466.1
Putative phosphoesterase, SbcD/Mre11-related protein.
 
    0.652
AGI48505.1
Fe-S oxidoreductase.
  
    0.619
AGI47016.1
Orc1/cdc6 family replication initiation protein; Involved in regulation of DNA replication.
 
 
   0.539
AGI47345.1
Putative ICC-like phosphoesterase.
 
    0.538
lig
DNA ligase I, ATP-dependent (dnl1); DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
 
    0.495
AGI47592.1
Putative transcriptional regulator.
  
     0.469
top6B
DNA topoisomerase VI, B subunit; Relaxes both positive and negative superturns and exhibits a strong decatenase activity.
 
 
   0.467
rpl10
Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
  
 
   0.438
AGI47713.1
Orc1/cdc6 family replication initiation protein; Involved in regulation of DNA replication.
 
 
   0.431
AGI47167.1
Transcriptional regulator of a riboflavin/FAD biosynthetic operon.
  
     0.428
Your Current Organism:
Thermoplasmatales archaeon BRNA1
NCBI taxonomy Id: 1054217
Other names: T. archaeon BRNA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.