STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI48516.1Putative transcriptional regulator. (130 aa)    
Predicted Functional Partners:
AGI48517.1
Lhr-like helicase.
       0.634
AGI47713.1
Orc1/cdc6 family replication initiation protein; Involved in regulation of DNA replication.
  
     0.592
AGI47016.1
Orc1/cdc6 family replication initiation protein; Involved in regulation of DNA replication.
  
     0.581
AGI47479.1
Archaeal conserved hypothetical protein.
  
     0.487
AGI48518.1
Hypothetical protein.
       0.445
AGI47345.1
Putative ICC-like phosphoesterase.
  
     0.441
rrp4
RNA-binding protein Rrp4 and related proteins (containing S1 domain and KH domain); Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome.
  
     0.423
AGI47069.1
Eukaryotic-type DNA primase, large subunit.
  
     0.414
AGI48277.1
ATP-utilizing enzymes of ATP-grasp superfamily (probably carboligases).
  
     0.404
Your Current Organism:
Thermoplasmatales archaeon BRNA1
NCBI taxonomy Id: 1054217
Other names: T. archaeon BRNA1
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