STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK80411.1Peptide/nickel transport system substrate-binding protein. (608 aa)    
Predicted Functional Partners:
SHL43481.1
Microcin C transport system permease protein.
 
 
 0.949
SHL43495.1
Microcin C transport system permease protein.
 
 
 0.946
SHL43520.1
Microcin C transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.920
SHL04366.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
 0.729
SHK80391.1
Hypothetical protein.
       0.682
SHL66657.1
ATP-binding cassette, subfamily C.
     
 0.670
SHK80351.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
    
  0.619
SHL81762.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.608
SHL81705.1
Peptide/nickel transport system substrate-binding protein.
 
 
0.599
SHK79694.1
Dipeptide transport system substrate-binding protein.
  
 
 0.575
Your Current Organism:
Roseovarius marisflavi
NCBI taxonomy Id: 1054996
Other names: CGMCC 1.10799, DSM 24881, JCM 17553, R. marisflavi, Roseovarius marisflavi Li et al. 2014, Roseovarius sp. H50, strain H50
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.