STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nwat_0048KEGG: net:Neut_0161 ATP-binding region, ATPase-like. (290 aa)    
Predicted Functional Partners:
Nwat_1160
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; response regulator receiver; Hpt domain protein; KEGG: noc:Noc_1271 hybrid signal transduction histidine kinase and diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine ki [...]
  
  
 0.987
Nwat_1518
KEGG: noc:Noc_1607 sulfate transporter/antisigma-factor antagonist STAS.
  
 
 0.956
Nwat_1525
KEGG: noc:Noc_1602 hypothetical protein.
  
 
 0.956
Nwat_3031
KEGG: noc:Noc_2976 anti-sigma factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Belongs to the anti-sigma-factor antagonist family.
  
 
 0.956
Nwat_0049
KEGG: net:Neut_0162 hypothetical protein.
 
     0.942
Nwat_1358
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; response regulator receiver; PAS fold-4 domain protein; KEGG: noc:Noc_1758 PAS sensor diguanylate cyclase/phophodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; response regulator receiver; PAS domain containing protein.
  
 
 0.928
Nwat_2727
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; response regulator receiver; KEGG: noc:Noc_0376 multisensor diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; response regulator receiver.
  
 
 0.928
Nwat_0434
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: noc:Noc_2682 PAS sensor diguanylate cyclase/phophodiesterase; SMART: EAL domain protein; GGDEF domain containing protein.
  
 
 0.907
fliA
RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.
  
 
 0.854
Nwat_2204
Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
   
    0.850
Your Current Organism:
Nitrosococcus watsonii
NCBI taxonomy Id: 105559
Other names: N. watsonii C-113, Nitrosococcus sp. C-113, Nitrosococcus watsonii C-113, Nitrosococcus watsonii str. C-113, Nitrosococcus watsonii strain C-113
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