STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybeYProtein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (153 aa)    
Predicted Functional Partners:
Nwat_0336
PFAM: PhoH family protein; KEGG: noc:Noc_0238 PhoH-like protein.
  
  
 0.990
Nwat_0338
KEGG: noc:Noc_0240 Mg2+/Co2+ transporter; PFAM: CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein.
  
  
 0.969
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
 
  
 0.881
Nwat_0709
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.868
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
    
 
 0.845
Nwat_0030
KEGG: noc:Noc_0032 rhodanese-like protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein.
   
   0.844
rplQ
KEGG: noc:Noc_2299 ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17.
   
 
 0.842
rsmH
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
  
 
 
 0.841
Nwat_2226
KEGG: noc:Noc_2380 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase.
   
 
 0.839
dnaJ
Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]
  
 
 0.837
Your Current Organism:
Nitrosococcus watsonii
NCBI taxonomy Id: 105559
Other names: N. watsonii C-113, Nitrosococcus sp. C-113, Nitrosococcus watsonii C-113, Nitrosococcus watsonii str. C-113, Nitrosococcus watsonii strain C-113
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