STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nwat_0592PFAM: protein of unknown function DUF1022; KEGG: noc:Noc_0559 hypothetical protein. (309 aa)    
Predicted Functional Partners:
Nwat_0593
PFAM: glycosyl transferase group 1; KEGG: noc:Noc_0560 glycosyl transferase, group 1.
 
     0.953
Nwat_0595
PFAM: O-antigen polymerase; KEGG: noc:Noc_0562 O-antigen polymerase.
       0.599
Nwat_0594
PFAM: glycosyl transferase family 9; KEGG: noc:Noc_0561 glycosyl transferase family protein.
       0.594
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
       0.535
Nwat_2351
KEGG: noc:Noc_0760 hypothetical protein.
  
     0.443
Your Current Organism:
Nitrosococcus watsonii
NCBI taxonomy Id: 105559
Other names: N. watsonii C-113, Nitrosococcus sp. C-113, Nitrosococcus watsonii C-113, Nitrosococcus watsonii str. C-113, Nitrosococcus watsonii strain C-113
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