STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nwat_1056KEGG: noc:Noc_2043 hypothetical protein. (130 aa)    
Predicted Functional Partners:
Nwat_1057
PFAM: OmpA/MotB domain protein; KEGG: noc:Noc_2042 OmpA/MotB.
 
 
 0.907
lolA
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
    
 
 0.840
Nwat_0133
Protein TolA; KEGG: noc:Noc_0144 TonB-like; TIGRFAM: protein TolA; TonB family protein; PFAM: Tol-Pal system TolA.
    
   0.807
Nwat_2485
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
    
   0.807
Nwat_2734
TIGRFAM: TonB family protein; KEGG: noc:Noc_0369 TonB-like protein.
    
   0.807
Nwat_1055
Hypothetical protein.
       0.664
Nwat_0447
KEGG: noc:Noc_2669 LolC/E family lipoprotein releasing system, transmembrane protein; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214.
    
 
 0.511
Nwat_0874
PFAM: protein of unknown function DUF214; KEGG: noc:Noc_2216 hypothetical protein.
    
 
 0.511
Nwat_0875
PFAM: protein of unknown function DUF214; KEGG: noc:Noc_2215 hypothetical protein.
    
 
 0.511
Nwat_1161
PFAM: protein of unknown function DUF214; KEGG: noc:Noc_1272 hypothetical protein.
    
 
 0.511
Your Current Organism:
Nitrosococcus watsonii
NCBI taxonomy Id: 105559
Other names: N. watsonii C-113, Nitrosococcus sp. C-113, Nitrosococcus watsonii C-113, Nitrosococcus watsonii str. C-113, Nitrosococcus watsonii strain C-113
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