STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nwat_1314PFAM: cytochrome c class I; KEGG: noc:Noc_1797 hypothetical protein. (483 aa)    
Predicted Functional Partners:
Nwat_1309
KEGG: noc:Noc_1800 hypothetical protein.
 
  
 0.862
Nwat_1316
KEGG: noc:Noc_1795 hypothetical protein.
 
     0.853
Nwat_1635
KEGG: noc:Noc_1481 hypothetical protein.
 
 
 0.829
Nwat_1310
PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: noc:Noc_1799 NADH-flavin oxidoreductase/NADH oxidase.
 
     0.824
Nwat_1652
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: noc:Noc_1457 YVTN beta-propeller repeat-containing protein.
  
 
 0.799
Nwat_2987
KEGG: noc:Noc_2899 hypothetical protein.
  
 
 0.799
Nwat_1315
Arachidonate 15-lipoxygenase; KEGG: npu:Npun_R0559 lipoxygenase-like protein; PFAM: Lipoxygenase.
       0.741
Nwat_1313
KEGG: rle:pRL110494 putative transmembrane protein.
       0.737
Nwat_1312
KEGG: noc:Noc_1798 hypothetical protein.
 
  
0.706
Nwat_2006
PFAM: Patatin; KEGG: noc:Noc_1025 patatin.
 
     0.633
Your Current Organism:
Nitrosococcus watsonii
NCBI taxonomy Id: 105559
Other names: N. watsonii C-113, Nitrosococcus sp. C-113, Nitrosococcus watsonii C-113, Nitrosococcus watsonii str. C-113, Nitrosococcus watsonii strain C-113
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