STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nwat_1596PFAM: outer membrane efflux protein; KEGG: noc:Noc_1541 outer membrane efflux protein. (486 aa)    
Predicted Functional Partners:
Nwat_1595
PFAM: multicopper oxidase type 3; multicopper oxidase type 2; KEGG: noc:Noc_1542 multicopper oxidase, type 3.
 
     0.808
Nwat_0107
PFAM: secretion protein HlyD family protein; KEGG: bcm:Bcenmc03_1480 secretion protein HlyD family protein.
  
 
 0.736
Nwat_2937
KEGG: noc:Noc_2937 secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein.
  
 
 0.736
Nwat_0836
PFAM: Carbohydrate-selective porin OprB; KEGG: dba:Dbac_1095 carbohydrate-selective porin OprB.
  
   
 0.716
Nwat_0140
PFAM: outer membrane efflux protein; KEGG: noc:Noc_0150 outer membrane efflux protein.
  
     0.702
Nwat_1212
KEGG: noc:Noc_1339 secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.655
Nwat_1810
PFAM: protein of unknown function DUF1597; KEGG: noc:Noc_2005 hypothetical protein.
  
     0.655
Nwat_1673
KEGG: noc:Noc_1419 secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.647
Nwat_1803
PFAM: protein of unknown function DUF1597; KEGG: noc:Noc_2005 hypothetical protein.
  
     0.631
Nwat_1296
KEGG: noc:Noc_1817 type I secretion membrane fusion protein, HlyD; TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein.
  
 
 0.586
Your Current Organism:
Nitrosococcus watsonii
NCBI taxonomy Id: 105559
Other names: N. watsonii C-113, Nitrosococcus sp. C-113, Nitrosococcus watsonii C-113, Nitrosococcus watsonii str. C-113, Nitrosococcus watsonii strain C-113
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.