STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK02095.1Predicted metalloprotease, contains C-terminal PDZ domain. (560 aa)    
Predicted Functional Partners:
SHK02121.1
Protein of unknown function.
       0.605
SHK02154.1
GSCFA family protein.
       0.605
SHK71405.1
Hypothetical protein.
  
     0.537
SHK51120.1
Relaxase/Mobilisation nuclease domain-containing protein.
  
     0.496
SHK33296.1
Zinc carboxypeptidase.
  
     0.495
SHL01579.1
Hypothetical protein.
  
     0.490
SHL51702.1
NHL repeat-containing protein.
  
     0.466
SHK13442.1
Predicted Zn-dependent peptidase.
  
     0.462
SHK71344.1
N-terminal double-transmembrane domain-containing protein.
  
     0.458
SHK71372.1
Hypothetical protein.
  
     0.456
Your Current Organism:
Muricauda antarctica
NCBI taxonomy Id: 1055723
Other names: CGMCC 1.12174, JCM 18450, M. antarctica, Muricauda antarctica Wu et al. 2013, Muricauda sp. Ar-22, strain Ar-22
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