STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK05048.1Hypothetical protein. (456 aa)    
Predicted Functional Partners:
SHK05020.1
LPS export ABC transporter protein LptC.
 
     0.934
SHK04969.1
Hemolysin, contains CBS domains.
 
     0.840
SHK04944.1
Peptidyl-prolyl cis-trans isomerase D.
 
 
   0.815
SHK04990.1
Hypothetical protein.
       0.793
SHK17391.1
Protein of unknown function.
 
    0.786
SHL66450.1
Hypothetical protein.
  
     0.775
SHK54529.1
Biopolymer transport protein ExbD.
  
     0.774
SHK54557.1
Biopolymer transport protein ExbD.
  
     0.772
SHK56475.1
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
     0.772
SHK54585.1
Biopolymer transport protein ExbD.
  
     0.770
Your Current Organism:
Muricauda antarctica
NCBI taxonomy Id: 1055723
Other names: CGMCC 1.12174, JCM 18450, M. antarctica, Muricauda antarctica Wu et al. 2013, Muricauda sp. Ar-22, strain Ar-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.