STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK10898.1Ig-like domain-containing protein. (539 aa)    
Predicted Functional Partners:
SHK40453.1
Tetratricopeptide repeat-containing protein.
  
     0.757
SHK74354.1
Family of unknown function.
  
     0.752
SHK62135.1
Surface antigen.
  
     0.734
SHK05073.1
Hypothetical protein.
  
    0.732
SHK32550.1
Outer membrane protein transport protein (OMPP1/FadL/TodX).
  
     0.720
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.716
SHK12849.1
Hypothetical protein.
  
     0.712
SHK55727.1
Uncharacterized membrane protein YfcA.
  
     0.694
SHK03998.1
Hypothetical protein.
  
     0.684
SHK61421.1
Cell division protein FtsQ.
  
     0.676
Your Current Organism:
Muricauda antarctica
NCBI taxonomy Id: 1055723
Other names: CGMCC 1.12174, JCM 18450, M. antarctica, Muricauda antarctica Wu et al. 2013, Muricauda sp. Ar-22, strain Ar-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.