STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK15173.1Duplicated orphan permease. (795 aa)    
Predicted Functional Partners:
SHK15105.1
Putative ABC transport system ATP-binding protein.
 
  0.941
SHK15070.1
HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.921
SHK15539.1
ABC-type lipoprotein export system, ATPase component.
 
  0.902
SHK14974.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
     0.833
SHK15042.1
Outer membrane protein TolC.
 
 
   0.769
SHK15138.1
ABC-type antimicrobial peptide transport system, permease component.
 
 
 
0.742
SHK15197.1
Putative ABC transport system permease protein.
 
    
0.741
SHK15232.1
Putative ABC transport system permease protein.
 
 
 
0.694
SHK15295.1
Putative ABC transport system permease protein.
 
    
0.633
SHK15264.1
ABC-type antimicrobial peptide transport system, permease component.
 
    
0.628
Your Current Organism:
Muricauda antarctica
NCBI taxonomy Id: 1055723
Other names: CGMCC 1.12174, JCM 18450, M. antarctica, Muricauda antarctica Wu et al. 2013, Muricauda sp. Ar-22, strain Ar-22
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