STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK18828.1ABC-2 type transport system ATP-binding protein. (237 aa)    
Predicted Functional Partners:
SHK18799.1
Hypothetical protein.
 
     0.943
SHL40842.1
ATP-binding cassette, subfamily B, MsbA.
  
  0.635
SHK18859.1
Hypothetical protein.
       0.623
SHK36454.1
ATP-binding cassette, subfamily B.
  
 
0.574
atpB
ATP synthase F0 subcomplex A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.
   
   0.554
SHK32921.1
ABC-type multidrug transport system, ATPase and permease component.
   
 
0.554
SHK18891.1
Protein involved in gliding motility SprE.
       0.535
SHK37377.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
   
  0.529
SHK69368.1
Cu-processing system permease protein.
   
  0.529
SHK76710.1
Protein involved in gliding motility GldF.
   
  0.529
Your Current Organism:
Muricauda antarctica
NCBI taxonomy Id: 1055723
Other names: CGMCC 1.12174, JCM 18450, M. antarctica, Muricauda antarctica Wu et al. 2013, Muricauda sp. Ar-22, strain Ar-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.