STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK20826.1Iron-regulated ABC transporter permease protein SufD. (438 aa)    
Predicted Functional Partners:
SHK20800.1
Fe-S cluster assembly ATP-binding protein.
 
 0.999
SHK20854.1
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.996
SHK20774.1
Iron-regulated ABC transporter membrane component SufB.
   
0.946
SHK20970.1
FeS assembly SUF system protein.
   
 0.930
SHL34067.1
Selenocysteine lyase/Cysteine desulfurase.
 
 0.835
SHK20944.1
Cysteine desulfuration protein SufE.
 
   0.828
SHK20714.1
Iron-sulfur cluster assembly protein; Belongs to the HesB/IscA family.
  
 
 0.787
SHK58651.1
Selenocysteine lyase/Cysteine desulfurase.
  
 
 0.632
SHL53650.1
Selenocysteine lyase/Cysteine desulfurase.
  
 
 0.632
SHK20743.1
Four helix bundle protein.
       0.453
Your Current Organism:
Muricauda antarctica
NCBI taxonomy Id: 1055723
Other names: CGMCC 1.12174, JCM 18450, M. antarctica, Muricauda antarctica Wu et al. 2013, Muricauda sp. Ar-22, strain Ar-22
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