STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK50947.1Hypothetical protein. (194 aa)    
Predicted Functional Partners:
SHL20058.1
Glutamate synthase (NADH) large subunit.
   
 
 0.681
SHK60077.1
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase.
    
  0.646
SHL41230.1
3-hydroxyacyl-CoA dehydrogenase.
    
  0.522
SHL21817.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.495
SHK44988.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
  
     0.492
SHL13098.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
  
    0.472
SHL45236.1
Cupin domain protein.
  
  
  0.465
SHK50425.1
Acetyltransferase (GNAT) domain-containing protein.
  
 
  0.452
SHK33977.1
Amidohydrolase family protein.
  
  
  0.436
SHK20884.1
Pregnancy-associated plasma protein-A.
  
     0.422
Your Current Organism:
Muricauda antarctica
NCBI taxonomy Id: 1055723
Other names: CGMCC 1.12174, JCM 18450, M. antarctica, Muricauda antarctica Wu et al. 2013, Muricauda sp. Ar-22, strain Ar-22
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.