STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK55727.1Uncharacterized membrane protein YfcA. (1112 aa)    
Predicted Functional Partners:
SHK79525.1
Membrane protein YfhO.
  
     0.766
SHK58492.1
Periplasmic chaperone for outer membrane proteins Skp.
  
     0.751
SHK03971.1
Lipopolysaccharide-assembly.
  
     0.749
yidC
Protein translocase subunit yidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
  
     0.745
SHK58456.1
Beta-barrel assembly machine subunit BamA.
  
     0.741
SHK58529.1
Periplasmic chaperone for outer membrane proteins Skp.
  
     0.740
SHK40453.1
Tetratricopeptide repeat-containing protein.
  
     0.735
SHK86355.1
PASTA domain-containing protein.
  
     0.722
SHL30157.1
Lipopolysaccharide export system permease protein.
  
     0.716
SHL30629.1
Thiol:disulfide interchange protein DsbD.
  
     0.704
Your Current Organism:
Muricauda antarctica
NCBI taxonomy Id: 1055723
Other names: CGMCC 1.12174, JCM 18450, M. antarctica, Muricauda antarctica Wu et al. 2013, Muricauda sp. Ar-22, strain Ar-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.