STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK68607.1Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain. (328 aa)    
Predicted Functional Partners:
SHK68637.1
DoxX-like family protein.
 
     0.559
SHK68577.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
       0.509
SHL33947.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
  
     0.489
SHL33981.1
DoxX-like family protein.
  
     0.475
SHK52578.1
DNA polymerase V; Belongs to the peptidase S24 family.
   
   0.456
SHK03087.1
AraC-type DNA-binding protein.
  
   0.436
SHK43359.1
AraC-type DNA-binding protein.
  
   0.419
SHK21608.1
Transcriptional regulator, AraC family.
  
   0.408
SHK68811.1
Transcriptional regulator, AraC family.
 
   0.407
SHL44021.1
Metal binding domain of Ada.
  
 
  0.403
Your Current Organism:
Muricauda antarctica
NCBI taxonomy Id: 1055723
Other names: CGMCC 1.12174, JCM 18450, M. antarctica, Muricauda antarctica Wu et al. 2013, Muricauda sp. Ar-22, strain Ar-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.