STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK71043.1Crp-like helix-turn-helix domain-containing protein. (349 aa)    
Predicted Functional Partners:
SHK71019.1
PAS/PAC sensor signal transduction histidine kinase.
 0.999
SHK90486.1
PAS domain S-box-containing protein.
 0.998
SHL35501.1
Hypothetical protein.
  
 0.996
SHK09095.1
Signal transduction histidine kinase.
 0.979
SHK85459.1
His Kinase A (phospho-acceptor) domain-containing protein.
 0.975
SHL44275.1
Signal transduction histidine kinase.
0.971
SHK86263.1
PAS domain S-box-containing protein.
 0.961
SHK29802.1
PAS domain S-box-containing protein.
 0.960
SHL14465.1
PAS domain S-box-containing protein.
 
 0.958
SHK07593.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
 0.955
Your Current Organism:
Muricauda antarctica
NCBI taxonomy Id: 1055723
Other names: CGMCC 1.12174, JCM 18450, M. antarctica, Muricauda antarctica Wu et al. 2013, Muricauda sp. Ar-22, strain Ar-22
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