STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK99513.1Hypothetical protein. (414 aa)    
Predicted Functional Partners:
SHK99549.1
Protein of unknown function.
 
     0.947
SHK99610.1
Galactose oxidase, central domain.
 
     0.869
SHL20306.1
Protein of unknown function.
 
     0.778
SHL20288.1
Galactose oxidase, central domain.
 
     0.774
SHL20540.1
Outer membrane protein.
  
     0.713
SHK44008.1
GLPGLI family protein.
  
     0.595
SHK99708.1
Two component transcriptional regulator, LytTR family.
 
     0.532
SHL43062.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.525
SHL43037.1
Susd and RagB outer membrane lipoprotein.
  
    0.466
SHK99674.1
Histidine kinase.
 
     0.446
Your Current Organism:
Muricauda antarctica
NCBI taxonomy Id: 1055723
Other names: CGMCC 1.12174, JCM 18450, M. antarctica, Muricauda antarctica Wu et al. 2013, Muricauda sp. Ar-22, strain Ar-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.