STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL53958.1Protein of unknown function. (330 aa)    
Predicted Functional Partners:
SHL53988.1
Protein of unknown function.
 
     0.948
SHL54086.1
Bacteroides conjugation system ATPase, TraG family.
 
     0.903
SHL54015.1
Bacteroides conjugative transposon TraK protein.
 
   
 0.902
SHL54211.1
Cellulose biosynthesis protein BcsQ.
 
     0.885
SHL54267.1
TraM recognition site of TraD and TraG.
 
     0.842
SHL54465.1
Adenine-specific DNA methylase, N12 class.
 
   0.799
SHL53931.1
Conjugative transposon protein TraO.
       0.786
SHL02672.1
Hypothetical protein.
 
     0.782
SHL02644.1
Protein of unknown function.
 
     0.773
SHL02758.1
Bacteroides conjugation system ATPase, TraG family.
 
     0.773
Your Current Organism:
Muricauda antarctica
NCBI taxonomy Id: 1055723
Other names: CGMCC 1.12174, JCM 18450, M. antarctica, Muricauda antarctica Wu et al. 2013, Muricauda sp. Ar-22, strain Ar-22
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.