STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL54267.1TraM recognition site of TraD and TraG. (843 aa)    
Predicted Functional Partners:
SHL54086.1
Bacteroides conjugation system ATPase, TraG family.
 
  
 0.870
SHL54015.1
Bacteroides conjugative transposon TraK protein.
 
     0.868
SHL54211.1
Cellulose biosynthesis protein BcsQ.
 
     0.850
SHL53958.1
Protein of unknown function.
 
     0.842
SHL53988.1
Protein of unknown function.
 
     0.833
SHL54465.1
Adenine-specific DNA methylase, N12 class.
 
     0.830
SHL34246.1
Hypothetical protein.
   
 
 0.800
SHK41937.1
Bacteroides conjugation system ATPase, TraG family.
 
  
 0.781
SHK41799.1
Bacteroides conjugative transposon TraK protein.
 
     0.777
SHK42109.1
Protein of unknown function.
 
     0.777
Your Current Organism:
Muricauda antarctica
NCBI taxonomy Id: 1055723
Other names: CGMCC 1.12174, JCM 18450, M. antarctica, Muricauda antarctica Wu et al. 2013, Muricauda sp. Ar-22, strain Ar-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.