STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL56938.1Transcriptional regulator, AraC family. (296 aa)    
Predicted Functional Partners:
SHL56961.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
     0.937
SHK73617.1
Hypothetical protein.
  
     0.626
SHL56985.1
Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB.
       0.572
SHL56910.1
AraC-type DNA-binding protein.
       0.566
SHK35871.1
Conserved hypothetical protein.
  
     0.501
SHK20569.1
Ketopantoate reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
  
     0.489
SHL72077.1
Hypothetical protein; Partial gene; manually curated.
  
     0.481
SHK73589.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
     0.433
SHL71135.1
Hypothetical protein; Partial gene; manually curated.
  
     0.416
SHK43258.1
Hypothetical protein.
  
     0.407
Your Current Organism:
Muricauda antarctica
NCBI taxonomy Id: 1055723
Other names: CGMCC 1.12174, JCM 18450, M. antarctica, Muricauda antarctica Wu et al. 2013, Muricauda sp. Ar-22, strain Ar-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.