STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL69930.1Hypothetical protein. (230 aa)    
Predicted Functional Partners:
SHL69959.1
OmpA family protein.
 
     0.799
SHL23305.1
Hypothetical protein.
  
     0.620
SHL70066.1
Starch-binding associating with outer membrane.
 
     0.587
SHL70036.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.508
SHL42914.1
Putative auto-transporter adhesin, head GIN domain.
  
     0.492
SHL69984.1
Hypothetical protein.
       0.486
SHL10407.1
Uncharacterized damage-inducible protein DinB (forms a four-helix bundle).
  
     0.480
SHK57993.1
Hypothetical protein.
  
     0.441
SHK37103.1
Hypothetical protein.
  
     0.439
rnhB
RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.436
Your Current Organism:
Muricauda antarctica
NCBI taxonomy Id: 1055723
Other names: CGMCC 1.12174, JCM 18450, M. antarctica, Muricauda antarctica Wu et al. 2013, Muricauda sp. Ar-22, strain Ar-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.