STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ70863.1PFAM: GTPase of unknown function; Elongation factor Tu GTP binding domain; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. (288 aa)    
Predicted Functional Partners:
rpl13
Ribosomal protein L13, archaeal/eukaryotic; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.999
rpl3
Archaeal ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
  
 
 0.999
rpl15
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
   0.999
rpl14
Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
   
 
 0.999
rpl24
Ribosomal protein L24p/L26e, archaeal/eukaryotic; Located at the polypeptide exit tunnel on the outside of the subunit.
  
 
 0.999
AFZ70131.1
PFAM: GTPase of unknown function; TIGRFAM: small GTP-binding protein domain.
   
 
 0.956
flpA
Fibrillarin-like rRNA methylase; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family.
 
 0.950
rpl30
PFAM: Ribosomal protein L30p/L7e; TIGRFAM: 50S ribosomal protein L30P, archaeal.
   
 
 0.940
rps8e
PFAM: Ribosomal protein S8e; TIGRFAM: ribosomal protein S8.e.
   
 
 0.935
AFZ70340.1
tRNA/rRNA cytosine-C5-methylase; PFAM: NOL1/NOP2/sun family; PUA domain; TIGRFAM: uncharacterized domain 2.
 
 
 0.922
Your Current Organism:
Caldisphaera lagunensis
NCBI taxonomy Id: 1056495
Other names: C. lagunensis DSM 15908, Caldisphaera lagunensis DSM 15908, Caldisphaera lagunensis IC-154, Caldisphaera lagunensis JCM 11604, Caldisphaera lagunensis str. DSM 15908, Caldisphaera lagunensis strain DSM 15908
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