STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B5807_09835NodB homology domain-containing protein. (354 aa)    
Predicted Functional Partners:
B5807_10989
Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily.
  
 0.885
B5807_10918
AA_TRNA_LIGASE_II domain-containing protein.
  
 0.773
B5807_03314
tRNA-synt_1c domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.629
B5807_02938
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.618
B5807_10222
Uncharacterized protein.
  
 0.592
B5807_10172
Uncharacterized protein.
  
 0.592
B5807_09079
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.592
B5807_08695
AA_TRNA_LIGASE_II domain-containing protein.
   
 0.586
B5807_08076
AA_TRNA_LIGASE_II domain-containing protein.
   
 0.555
B5807_07709
Uncharacterized protein.
   
 0.555
Your Current Organism:
Epicoccum nigrum
NCBI taxonomy Id: 105696
Other names: ATCC 24428 [[Phoma epicoccina]], CBS 173.73 [[Phoma epicoccina]], E. nigrum, Epicoccum nigrum Link, 2015, Epicoccum purpurascens, Epicoccum sp. SGSGf34, IMI 164070 [[Phoma epicoccina]], Phoma epicoccina
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.