STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B5807_06499WD_REPEATS_REGION domain-containing protein. (879 aa)    
Predicted Functional Partners:
B5807_05579
DNA helicase; Belongs to the MCM family.
   
 
 0.994
B5807_01123
Uncharacterized protein.
   
 
 0.994
B5807_02836
DNA helicase; Belongs to the MCM family.
   
 
 0.993
B5807_09354
DNA helicase; Belongs to the MCM family.
   
 
 0.992
B5807_08972
DNA helicase; Belongs to the MCM family.
   
 
 0.992
B5807_05695
DNA helicase; Belongs to the MCM family.
   
 
 0.992
B5807_00621
DNA polymerase.
   
 
 0.992
B5807_11091
DNA replication complex GINS protein SLD5; The GINS complex plays an essential role in the initiation of DNA replication; Belongs to the GINS4/SLD5 family.
   
 
 0.990
B5807_03754
DNA replication complex GINS protein PSF2; Belongs to the GINS2/PSF2 family.
   
 
 0.988
B5807_04501
Uncharacterized protein.
   
 
 0.986
Your Current Organism:
Epicoccum nigrum
NCBI taxonomy Id: 105696
Other names: ATCC 24428 [[Phoma epicoccina]], CBS 173.73 [[Phoma epicoccina]], E. nigrum, Epicoccum nigrum Link, 2015, Epicoccum purpurascens, Epicoccum sp. SGSGf34, IMI 164070 [[Phoma epicoccina]], Phoma epicoccina
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.