STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B5807_05530PHD-type domain-containing protein. (1022 aa)    
Predicted Functional Partners:
B5807_04781
MRG domain-containing protein.
    
 
 0.966
B5807_09024
WD_REPEATS_REGION domain-containing protein.
    
 
 0.939
B5807_02500
Hist_deacetyl domain-containing protein.
   
 
 0.930
B5807_04110
FAS1 domain-containing protein.
   
 
 0.926
B5807_00884
HDAC_interact domain-containing protein.
   
 
 0.926
B5807_02493
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 
 0.906
B5807_08816
Uncharacterized protein.
    
 
 0.879
B5807_11671
Uncharacterized protein.
   
 
 0.834
B5807_05956
Thioredoxin-like_fold domain-containing protein.
   
 
 0.834
B5807_06034
Uncharacterized protein.
   
 
 0.834
Your Current Organism:
Epicoccum nigrum
NCBI taxonomy Id: 105696
Other names: ATCC 24428 [[Phoma epicoccina]], CBS 173.73 [[Phoma epicoccina]], E. nigrum, Epicoccum nigrum Link, 2015, Epicoccum purpurascens, Epicoccum sp. SGSGf34, IMI 164070 [[Phoma epicoccina]], Phoma epicoccina
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.