STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B5807_05957Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (320 aa)    
Predicted Functional Partners:
B5807_04760
Ribosomal_L14e domain-containing protein.
   
 
 0.697
B5807_04437
KOW domain-containing protein.
   
 
 0.693
B5807_04761
Uncharacterized protein.
   
 
 0.622
B5807_11539
Ribosomal_L28e domain-containing protein.
   
   0.561
B5807_00676
60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.
   
   0.550
B5807_00825
Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.
   
   0.540
B5807_06834
Ribosomal_L2_C domain-containing protein.
   
 
 0.527
B5807_03526
Uncharacterized protein.
   
   0.518
B5807_04268
Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.
   
   0.517
B5807_10855
Uncharacterized protein.
   
   0.516
Your Current Organism:
Epicoccum nigrum
NCBI taxonomy Id: 105696
Other names: ATCC 24428 [[Phoma epicoccina]], CBS 173.73 [[Phoma epicoccina]], E. nigrum, Epicoccum nigrum Link, 2015, Epicoccum purpurascens, Epicoccum sp. SGSGf34, IMI 164070 [[Phoma epicoccina]], Phoma epicoccina
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.