STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B5807_05858Uncharacterized protein. (425 aa)    
Predicted Functional Partners:
B5807_06147
Uncharacterized protein.
   
 
 0.985
B5807_03577
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.977
B5807_09427
Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.
   
 
 0.976
B5807_00009
Uncharacterized protein.
   
   0.976
B5807_00099
Uncharacterized protein.
   
 
 0.975
B5807_11078
Uncharacterized protein.
   
 
 0.973
B5807_07245
Uncharacterized protein.
   
 
 0.968
B5807_07960
MRP-L46 domain-containing protein.
   
 
 0.966
B5807_08573
Uncharacterized protein.
   
 
 0.964
B5807_10613
L51_S25_CI-B8 domain-containing protein.
   
 
 0.961
Your Current Organism:
Epicoccum nigrum
NCBI taxonomy Id: 105696
Other names: ATCC 24428 [[Phoma epicoccina]], CBS 173.73 [[Phoma epicoccina]], E. nigrum, Epicoccum nigrum Link, 2015, Epicoccum purpurascens, Epicoccum sp. SGSGf34, IMI 164070 [[Phoma epicoccina]], Phoma epicoccina
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