STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B5807_05973Uncharacterized protein. (181 aa)    
Predicted Functional Partners:
B5807_05972
DNA_mis_repair domain-containing protein.
 
  
 0.997
B5807_00165
DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).
 
 0.992
B5807_10778
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
 
 0.988
B5807_02732
Uncharacterized protein.
  
 
0.986
B5807_11675
MutL_C domain-containing protein.
    
 0.981
B5807_05842
DNA_MISMATCH_REPAIR_2 domain-containing protein.
 
 0.975
B5807_08531
Uncharacterized protein.
   
 0.973
B5807_01565
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
 
 0.958
B5807_02470
Zn(2)-C6 fungal-type domain-containing protein.
  
 0.949
B5807_06027
Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.
    
 0.919
Your Current Organism:
Epicoccum nigrum
NCBI taxonomy Id: 105696
Other names: ATCC 24428 [[Phoma epicoccina]], CBS 173.73 [[Phoma epicoccina]], E. nigrum, Epicoccum nigrum Link, 2015, Epicoccum purpurascens, Epicoccum sp. SGSGf34, IMI 164070 [[Phoma epicoccina]], Phoma epicoccina
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.