STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B5807_02744Uncharacterized protein. (1270 aa)    
Predicted Functional Partners:
B5807_03301
Uncharacterized protein.
   
  
 0.647
B5807_00154
Uncharacterized protein.
   
 0.638
B5807_10784
Uncharacterized protein.
    
 0.543
B5807_08282
Ubiquitin carboxyl-terminal hydrolase.
    
  0.532
B5807_02170
Uncharacterized protein; Belongs to the peptidase M16 family.
   
  0.513
B5807_02499
MPN domain-containing protein.
    
  0.504
B5807_12015
RING-type domain-containing protein.
    
  0.497
B5807_05330
Uncharacterized protein.
    
0.496
B5807_10415
MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.
    
  0.492
B5807_06351
Peptidase_M16_C domain-containing protein.
   
  0.481
Your Current Organism:
Epicoccum nigrum
NCBI taxonomy Id: 105696
Other names: ATCC 24428 [[Phoma epicoccina]], CBS 173.73 [[Phoma epicoccina]], E. nigrum, Epicoccum nigrum Link, 2015, Epicoccum purpurascens, Epicoccum sp. SGSGf34, IMI 164070 [[Phoma epicoccina]], Phoma epicoccina
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.