STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B5807_02635Uncharacterized protein. (330 aa)    
Predicted Functional Partners:
B5807_07336
AMP-binding domain-containing protein.
     
 0.839
B5807_11892
AMP-binding domain-containing protein.
     
 0.810
B5807_07633
AB hydrolase-1 domain-containing protein.
  
 
 0.778
B5807_07738
AB hydrolase-1 domain-containing protein.
  
 
 0.778
B5807_03148
AB hydrolase-1 domain-containing protein.
  
 
 0.778
B5807_03386
Uncharacterized protein.
  
 
 0.778
B5807_00653
PKS_ER domain-containing protein.
     
 0.773
B5807_05593
Uncharacterized protein.
     
 0.756
B5807_06307
Uncharacterized protein.
     
 0.745
B5807_01612
Uncharacterized protein.
     
 0.726
Your Current Organism:
Epicoccum nigrum
NCBI taxonomy Id: 105696
Other names: ATCC 24428 [[Phoma epicoccina]], CBS 173.73 [[Phoma epicoccina]], E. nigrum, Epicoccum nigrum Link, 2015, Epicoccum purpurascens, Epicoccum sp. SGSGf34, IMI 164070 [[Phoma epicoccina]], Phoma epicoccina
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.