STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B5807_00032Amine oxidase. (493 aa)    
Predicted Functional Partners:
B5807_05122
Tryptophan synthase.
     
 0.809
B5807_01232
Uncharacterized protein.
    
 0.734
B5807_06326
Uncharacterized protein.
   
 0.711
B5807_09024
WD_REPEATS_REGION domain-containing protein.
    
 0.677
B5807_03179
Uncharacterized protein.
    
 0.668
B5807_02493
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.660
B5807_02500
Hist_deacetyl domain-containing protein.
    
 0.660
B5807_08631
Histone H2B; Belongs to the histone H2B family.
    
  0.659
B5807_01760
Uncharacterized protein.
     
 0.656
B5807_08630
Histone H2A; Belongs to the histone H2A family.
    
 0.646
Your Current Organism:
Epicoccum nigrum
NCBI taxonomy Id: 105696
Other names: ATCC 24428 [[Phoma epicoccina]], CBS 173.73 [[Phoma epicoccina]], E. nigrum, Epicoccum nigrum Link, 2015, Epicoccum purpurascens, Epicoccum sp. SGSGf34, IMI 164070 [[Phoma epicoccina]], Phoma epicoccina
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.