SDW26160.1 protein (Thiocapsa roseopersicina)

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Score

SDW26160.1

ATP-binding cassette, subfamily F, uup. (638 aa)

Predicted Functional Partners:

rplD

0.923

rpsT

0.923

rplU

0.920

rplC

0.919

rpsC

0.918

rplM

0.918

rpsO

0.918

rplR

0.916

rpmH

0.916

rplT

0.916

Your Current Organism:

Thiocapsa roseopersicina

NCBI taxonomy Id: 1058
Other names: DSM 217, T. roseopersicina, Thiocapsa floridana, Thiocapsa minima

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDW26160.1	rplC	SAMN05421783_102274	SAMN05421783_101349	ATP-binding cassette, subfamily F, uup.	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.919
SDW26160.1	rplD	SAMN05421783_102274	SAMN05421783_101350	ATP-binding cassette, subfamily F, uup.	LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel.	0.923
SDW26160.1	rplM	SAMN05421783_102274	SAMN05421783_110156	ATP-binding cassette, subfamily F, uup.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.918
SDW26160.1	rplR	SAMN05421783_102274	SAMN05421783_101365	ATP-binding cassette, subfamily F, uup.	LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.916
SDW26160.1	rplT	SAMN05421783_102274	SAMN05421783_12935	ATP-binding cassette, subfamily F, uup.	Large subunit ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.916
SDW26160.1	rplU	SAMN05421783_102274	SAMN05421783_111152	ATP-binding cassette, subfamily F, uup.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.920
SDW26160.1	rpmH	SAMN05421783_102274	SAMN05421783_11596	ATP-binding cassette, subfamily F, uup.	LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family.	0.916
SDW26160.1	rpsC	SAMN05421783_102274	SAMN05421783_101355	ATP-binding cassette, subfamily F, uup.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.918
SDW26160.1	rpsO	SAMN05421783_102274	SAMN05421783_11933	ATP-binding cassette, subfamily F, uup.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.918
SDW26160.1	rpsT	SAMN05421783_102274	SAMN05421783_10138	ATP-binding cassette, subfamily F, uup.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.923
rplC	SDW26160.1	SAMN05421783_101349	SAMN05421783_102274	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	ATP-binding cassette, subfamily F, uup.	0.919
rplC	rplD	SAMN05421783_101349	SAMN05421783_101350	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel.	0.999
rplC	rplM	SAMN05421783_101349	SAMN05421783_110156	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rplC	rplR	SAMN05421783_101349	SAMN05421783_101365	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.999
rplC	rplT	SAMN05421783_101349	SAMN05421783_12935	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Large subunit ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.995
rplC	rplU	SAMN05421783_101349	SAMN05421783_111152	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.994
rplC	rpmH	SAMN05421783_101349	SAMN05421783_11596	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family.	0.977
rplC	rpsC	SAMN05421783_101349	SAMN05421783_101355	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplC	rpsO	SAMN05421783_101349	SAMN05421783_11933	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.996
rplC	rpsT	SAMN05421783_101349	SAMN05421783_10138	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.985