STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW34193.1tRNA A37 threonylcarbamoyladenosine dehydratase. (274 aa)    
Predicted Functional Partners:
SDW34760.1
Cysteine desulfurase / selenocysteine lyase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
   
 0.752
SDW07681.1
Adenylyltransferase and sulfurtransferase.
 
0.713
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
 
    
 0.648
SDX24632.1
Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
    
 0.621
SDX57474.1
Cysteine desulfurase.
    
 0.621
SDW77536.1
Tat (twin-arginine translocation) pathway signal sequence.
    
 0.595
SDX47919.1
Selenocysteine lyase/Cysteine desulfurase.
    
 0.595
SDX39391.1
Sulfur carrier protein ThiS.
  
  0.588
SDW70119.1
Molybdopterin synthase subunit MoaD.
    
  0.519
SDX24039.1
Glycine oxidase.
    
  0.494
Your Current Organism:
Thiocapsa roseopersicina
NCBI taxonomy Id: 1058
Other names: DSM 217, T. roseopersicina, Thiocapsa floridana, Thiocapsa minima
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