Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDW37549.1 | SDW37572.1 | SAMN05421783_103242 | SAMN05421783_103243 | Hypothetical protein. | Uncharacterized iron-regulated protein. | 0.993 |
SDW37549.1 | SDW81152.1 | SAMN05421783_103242 | SAMN05421783_1096 | Hypothetical protein. | WD40-like Beta Propeller Repeat. | 0.822 |
SDW37549.1 | SDX56746.1 | SAMN05421783_103242 | SAMN05421783_1379 | Hypothetical protein. | Gamma-glutamyltranspeptidase / glutathione hydrolase. | 0.689 |
SDW37549.1 | glyA | SAMN05421783_103242 | SAMN05421783_103283 | Hypothetical protein. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.728 |
SDW37549.1 | gshA | SAMN05421783_103242 | SAMN05421783_11155 | Hypothetical protein. | Glutamate-cysteine ligase; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily. | 0.794 |
SDW37549.1 | gshB | SAMN05421783_103242 | SAMN05421783_106112 | Hypothetical protein. | Glutathione synthase; Belongs to the prokaryotic GSH synthase family. | 0.785 |
SDW37549.1 | pepA | SAMN05421783_103242 | SAMN05421783_10871 | Hypothetical protein. | Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides. | 0.829 |
SDW37549.1 | rplJ | SAMN05421783_103242 | SAMN05421783_101340 | Hypothetical protein. | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.807 |
SDW37549.1 | rplW | SAMN05421783_103242 | SAMN05421783_101351 | Hypothetical protein. | Large subunit ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.803 |
SDW37549.1 | rplX | SAMN05421783_103242 | SAMN05421783_101360 | Hypothetical protein. | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.802 |
SDW37572.1 | SDW37549.1 | SAMN05421783_103243 | SAMN05421783_103242 | Uncharacterized iron-regulated protein. | Hypothetical protein. | 0.993 |
SDW81152.1 | SDW37549.1 | SAMN05421783_1096 | SAMN05421783_103242 | WD40-like Beta Propeller Repeat. | Hypothetical protein. | 0.822 |
SDW81152.1 | SDX56746.1 | SAMN05421783_1096 | SAMN05421783_1379 | WD40-like Beta Propeller Repeat. | Gamma-glutamyltranspeptidase / glutathione hydrolase. | 0.704 |
SDW81152.1 | glyA | SAMN05421783_1096 | SAMN05421783_103283 | WD40-like Beta Propeller Repeat. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.862 |
SDW81152.1 | pepA | SAMN05421783_1096 | SAMN05421783_10871 | WD40-like Beta Propeller Repeat. | Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides. | 0.918 |
SDW81152.1 | rplJ | SAMN05421783_1096 | SAMN05421783_101340 | WD40-like Beta Propeller Repeat. | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.417 |
SDX56746.1 | SDW37549.1 | SAMN05421783_1379 | SAMN05421783_103242 | Gamma-glutamyltranspeptidase / glutathione hydrolase. | Hypothetical protein. | 0.689 |
SDX56746.1 | SDW81152.1 | SAMN05421783_1379 | SAMN05421783_1096 | Gamma-glutamyltranspeptidase / glutathione hydrolase. | WD40-like Beta Propeller Repeat. | 0.704 |
SDX56746.1 | gshA | SAMN05421783_1379 | SAMN05421783_11155 | Gamma-glutamyltranspeptidase / glutathione hydrolase. | Glutamate-cysteine ligase; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily. | 0.840 |
SDX56746.1 | gshB | SAMN05421783_1379 | SAMN05421783_106112 | Gamma-glutamyltranspeptidase / glutathione hydrolase. | Glutathione synthase; Belongs to the prokaryotic GSH synthase family. | 0.855 |
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