STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW37594.1Putative protease. (448 aa)    
Predicted Functional Partners:
SDX00515.1
Collagenase-like protease, PrtC family.
 
 0.900
SDW37572.1
Uncharacterized iron-regulated protein.
       0.777
SDX00484.1
Predicted lipid carrier protein YhbT, contains SCP2 domain.
 
  
 0.667
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
   
 
  0.545
SDW37549.1
Hypothetical protein.
       0.541
SDW26280.1
Cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein.
   
 
  0.523
SDW01067.1
Coproporphyrinogen III oxidase, anaerobic; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
    0.522
SDX67223.1
Predicted O-methyltransferase YrrM.
  
  
 0.437
SDX69854.1
Predicted O-methyltransferase YrrM.
  
  
 0.437
SDX72542.1
Hypothetical protein.
  
  
 0.437
Your Current Organism:
Thiocapsa roseopersicina
NCBI taxonomy Id: 1058
Other names: DSM 217, T. roseopersicina, Thiocapsa floridana, Thiocapsa minima
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