STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW78895.1Type IV pilus assembly protein PilB. (571 aa)    
Predicted Functional Partners:
SDW78923.1
Type II secretion system protein F (GspF).
 
 0.995
SDX15247.1
Type II secretion system protein F (GspF).
 
 0.976
SDW78957.1
Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.940
SDX10435.1
Type IV pilus assembly protein PilZ.
  
 
 
 0.933
SDX15220.1
General secretion pathway protein G.
 
 0.912
SDX14842.1
Type IV pilus assembly protein PilM.
 
 
 0.864
SDX14918.1
Type IV pilus assembly protein PilQ.
 
 
 
 0.860
SDX14858.1
Type IV pilus assembly protein PilN.
 
 
 0.857
SDX11937.1
Type IV pilus assembly protein PilE.
 
 0.854
SDX15121.1
General secretion pathway protein L.
  
 
 0.831
Your Current Organism:
Thiocapsa roseopersicina
NCBI taxonomy Id: 1058
Other names: DSM 217, T. roseopersicina, Thiocapsa floridana, Thiocapsa minima
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