STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW91260.1Putative redox protein. (149 aa)    
Predicted Functional Partners:
SDX09859.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.857
SDW67414.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.853
speD
S-adenosylmethionine decarboxylase; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 2 subfamily.
       0.728
ffh
Signal recognition particle subunit FFH/SRP54 (srp54); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the i [...]
   
    0.721
SDW91212.1
Hypothetical protein.
       0.602
SDW91292.1
CRP/FNR family transcriptional regulator, cyclic AMP receptor protein.
       0.578
SDW71819.1
Dihydrolipoamide dehydrogenase.
    
 0.575
SDX10286.1
Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
 
     0.506
argA
N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily.
  
     0.498
SDX59326.1
Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase.
   
 
  0.470
Your Current Organism:
Thiocapsa roseopersicina
NCBI taxonomy Id: 1058
Other names: DSM 217, T. roseopersicina, Thiocapsa floridana, Thiocapsa minima
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