STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX06159.1Chorismate lyase / 3-hydroxybenzoate synthase. (339 aa)    
Predicted Functional Partners:
SDW36947.1
Translation elongation factor 2 (EF-2/EF-G).
  
 
  0.902
SDW27016.1
Protein of unknown function.
  
 
  0.901
fusA
Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...]
    
  0.876
SDX44160.1
Elongation factor G.
    
  0.876
SDX06251.1
AMP-binding enzyme.
 
 
 0.875
SDX06320.1
Outer membrane lipoprotein-sorting protein.
 
   
 0.875
SDX06343.1
Predicted exporter.
 
     0.855
SDX06420.1
Predicted 3-hydroxylacyl-ACP dehydratase, HotDog domain.
 
     0.850
SDX06186.1
Demethylmenaquinone methyltransferase.
 
 
  0.843
SDX06401.1
Beta-ketoacyl synthase, N-terminal domain.
 
     0.842
Your Current Organism:
Thiocapsa roseopersicina
NCBI taxonomy Id: 1058
Other names: DSM 217, T. roseopersicina, Thiocapsa floridana, Thiocapsa minima
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